Search results for "minimum spanning tree"
showing 10 items of 34 documents
Automatic detection of hemangiomas using unsupervised segmentation of regions of interest
2016
In this paper we compare the performances of three automatic methods of identifying hemangioma regions in images: 1) unsupervised segmentation using the Otsu method, 2) Fuzzy C-means clustering (FCM) and 3) an improved region growing algorithm based on FCM (RG-FCM). For each image, the starting point of the algorithms is a rectangular region of interest (ROI) containing the hemangioma. For computing the performances of each method, the ROIs had been manually labeled in 2 classes: pixels of hemangioma and pixels of non-hemangioma. The computed scores are given separately for each image, as well as global performances across all ROIs for both classes. The best classification of non-hemangioma…
Efficient Online Laplacian Eigenmap Computation for Dimensionality Reduction in Molecular Phylogeny via Optimisation on the Sphere
2019
Reconstructing the phylogeny of large groups of large divergent genomes remains a difficult problem to solve, whatever the methods considered. Methods based on distance matrices are blocked due to the calculation of these matrices that is impossible in practice, when Bayesian inference or maximum likelihood methods presuppose multiple alignment of the genomes, which is itself difficult to achieve if precision is required. In this paper, we propose to calculate new distances for randomly selected couples of species over iterations, and then to map the biological sequences in a space of small dimension based on the partial knowledge of this genome similarity matrix. This mapping is then used …
The node-depth encoding
2008
The node-depth encoding has elements from direct and indirect encoding for trees which encodes trees by storing the depth of nodes in a list. Node-depth encoding applies specific search operators that is a typical characteristic for direct encodings. An investigation into the bias of the initialization process and the mutation operators of the node-depth encoding shows that the initialization process has a bias to solutions with small depths and diameters, and a bias towards stars. This investigation, also, shows that the mutation operators are unbiased. The performance of node-depth encoding is investigated for the bounded-diameter minimum spanning tree problem. The results are presented f…
Orientation matters
2008
The optimal communication spanning tree (OCST) problem is a well known $\mathcal{NP}$-hard combinatorial optimization problem which seeks a spanning tree that satisfies all given communication requirements for minimal total costs. It has been shown that optimal solutions of OCST problems are biased towards the much simpler minimum spanning tree (MST) problem. Therefore, problem-specific representations for EAs like heuristic variants of edge-sets that are biased towards MSTs show high performance.In this paper, additional properties of optimal solutions for Euclidean variants of OCST problems are studied. Experimental results show that not only edges in optimal trees are biased towards low-…
A new image segmentation approach using community detection algorithms
2015
Image segmentation has an important role in many image processing applications. Several methods exist for segmenting an image. However, this technique is still a relatively open topic for which various research works are regularly presented. With the recent developments on complex networks theory, image segmentation techniques based on graphs has considerably improved. In this paper, we present a new perspective of image segmentation, by applying three of the most efficient community detection algorithms, Louvain, infomap and stability optimization based on the louvain algorithm, and we extract communities in which the highest modularity feature is achieved. After we show that this measure …
On the low-dimensional Steiner minimum tree problem in Hamming metric
2013
While it is known that the d-dimensional Steiner minimum tree problem in Hamming metric is NP-complete if d is part of the input, it is an open question whether this also holds for fixed dimensions. In this paper, this question is answered by showing that the Steiner minimum tree problem in Hamming metric is already NP-complete in 3 dimensions. Furthermore, we show that, the minimum spanning tree gives a 2-2d approximation on the Steiner minimum tree for d>=2. Using this result, we analyse the so-called k-LCA and A"k approximation algorithms and show improved approximation guarantees for low dimensions.
Estimating the length of minimal spanning trees in compression of files
1984
Compression of a formatted file by a minimal spanning tree (MST) is studied. Here the records of the file are considered as the nodes of a weighted undirected graph. Each record pair is connected in the graph and the corresponding arc is weighted by the sum of field lengths of those fields which differ in the two records. The actual compression is made by constructing an MST of the graph and by storing it in an economic way to preserve the information of the file. The length of the MST is a useful measure in the estimation of the power of the compression. In the paper we study upper bounds of this length, especially in the case where the field lengths of the different fields may vary. The u…
Tabu search with strategic oscillation for the quadratic minimum spanning tree
2014
The quadratic minimum spanning tree problem consists of determining a spanning tree that minimizes the sum of costs of the edges and pairs of edges in the tree. Many algorithms and methods have been proposed for this hard combinatorial problem, including several highly sophisticated metaheuristics. This article presents a simple Tabu Search (TS) for this problem that incorporates Strategic Oscillation (SO) by alternating between constructive and destructive phases. The commonalties shared by this strategy and the more recently introduced methodology called iterated greedy search are shown and implications of their differences regarding the use of memory structures are identified. Extensive …
Guided local search for the optimal communication spanning tree problem
2011
This paper considers the optimal communication spanning tree (OCST) problem. Previous work analyzed features of high-quality solutions. Consequently, integrating this knowledge into a metaheuristic increases its performance for the OCST problem. In this paper, we present a guided local search (GLS) approach which dynamically changes the objective function to guide the search process into promising areas. In contrast to traditional approaches which reward promising solution features by favoring edges with low weights pointing towards the tree's center, GLS penalizes low-quality edges with large weights that do not point towards the tree's center.
Strategic sharing of a costly network
2012
We study minimum cost spanning tree problems for a set of users connected to a source. Prim’s algorithm provides a way of finding the minimum cost tree mm. This has led to several definitions in the literature, regarding how to distribute the cost. These rules propose different cost allocations, which can be understood as compensations and/or payments between players, with respect to the status quo point: each user pays for the connection she uses to be linked to the source. In this paper we analyze the rationale behind a distribution of the minimum cost by defining an a priori transfer structure. Our first result states the existence of a transfer structure such that no user is willing to …